Recent Submissions

  • The impact of public health interventions in the Nordic countries during the first year of SARS-CoV-2 transmission and evolution. 

    Duchene, Sebastian; Featherstone, Leo; Freiesleben de Blasio, Birgitte; Holmes, Edward C; Bohlin, Jon; Pettersson, John H-O
    Published 2021
    BackgroundMany countries have attempted to mitigate and control COVID-19 through non-pharmaceutical interventions, particularly with the aim of reducing population movement and contact. However, it remains unclear how the ...
    Article
  • Pathogenicity and transmissibility of a novel respirovirus isolated from a Malayan pangolin. 

    Yang, Rou; Peng, Jinyu; Zhai, Junqiong; Xiao, Kangpeng; Zhang, Xu; Li, Xiaobing; Chen, Xiaoyuan; Chen, Zu-Jin; Holmes, Edward C.; Irwin, David M.; Shan, Fen; Shen, Xuejuan; Chen, Wu; Shen, Yongyi
    Published 2021
    The identification of SARS-CoV-2-like viruses in Malayan pangolins (Manis javanica) has focused attention on these endangered animals and the viruses they carry. We successfully isolated a novel respirovirus from the lungs ...
    Article
  • Total virome characterizations of game animals in China reveals a spectrum of emerging viral pathogens 

    He, Wan-Ting; Hou, Xin; Zhao, Jin; Sun, Jiumeng; He, Haijian; Si, Wei; Wang, Jing; Jiang, Zhiwen; Yan, Ziqing; Xing, Gang; Lu, Meng; Suchard, Marc A.; Ji, Xiang; Gong, Wenjie; He, Biao; Li, Jun; Lemey, Philippe; Guo, Deyin; Tu, Changchun; Holmes, Edward C.; Shi, Mang; Su, Shuo
    Published 2021
    Game animals are wildlife species often traded and consumed as exotic food, and are potential reservoirs for SARS-CoV and SARS-CoV-2. We performed a meta-transcriptomic analysis of 1725 game animals, representing 16 species ...
    Preprint
  • Emergence and spread of SARS-CoV-2 lineages B.1.1.7 and P.1 in Italy 

    Di Giallonardo, Francesca; Puglia, Ilaria; Curini, Valentina; Camm�, Cesare; Mangone, Iolanda; Calistri, Paolo; Cobbin, Joanna C.A.; Holmes, Edward C.; Lorusso, Alessio
    Published 2021
    Abstract Italy�s second wave of SARS-CoV-2 has hit hard, with more than 3 million cases and over 100,000 deaths, representing an almost ten-fold increase on the numbers reported by August 2020. Herein, we present the ...
    Preprint
  • IFI27 transcription is an early predictor for COVID-19 outcomes; a multi-cohort observational study 

    Shojaei, Maryam; Shamshirian, Amir; Monkman, James; Grice, Laura; Tran, Minh; Tan, Chin Wee; Rossi, Gustavo Rodrigues; McCulloch, Timothy R.; Nalos, Marek; Chew, Keng Yih; Zhu, Yanshan; Xia, Yao; Wells, Timothy J.; Senegaglia, Alexandra Cristina; Rebelatto, Carmen L�cia Kuniyoshi; Franck, Claudio Luciano; dos Santos, Anna Flavia Ribeiro; de Noronha, Lucia; Motamen, Sepideh; Valadan, Reza; Amjadi, Omolbanin; Gogna, Rajan; Madan, Esha; Alizadeh-Navaei, Reza; Lamperti, Liliana; Zu�iga, Felipe; Nova-Lamperti, Estefania; Labarca, Gonzalo; Knippenberg, Ben; Herwanto, Velma; Wang, Ya; Phu, Amy; Chew, Tracy; Kwan, Timothy; Kim, Karan; Teoh, Sally; Pelaia, Tiana M; Kuan, Win Sen; Jee, Yvette; Iredell, Jon; O�Byrne, Ken; Fraser, John F.; Davis, Melissa J.; Belz, Gabrielle; Warkiani, Majid; Gallo, Carlos Salomon; Souza-Fonseca-Guimaraes, Fernando; Nguyen, Quan; Mclean, Anthony; Kulasinghe, Arutha; Short, Kirsty R.; Tang, Benjamin
    Published 2021
    Robust biomarkers that predict disease outcomes amongst COVID-19 patients are necessary for both patient triage and resource prioritisation. Numerous candidate biomarkers have been proposed for COVID-19. However, at present, ...
    Preprint

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