• Cu plates and Sn precipitates in Al-1.7%Cu-0.05%Sn alloy 

      La Fontaine, Alex; Marceau, Ross
      Published 2017
      Direct contact [email protected] Source of data (who collected it, at what organisation, etc.) The University of Sydney - Alex La Fontaine and Ross Marceau Significance (Why is this data significant?) First ...
      Open Access
      Dataset
    • Low-angle boundary in Zircon DN5 dataset for Deformation-induced trace element redistribution in zircon revealed using atom probe tomography 

      Cairney, Julie; La Fontaine, Alex; Piazolo, Sandra; Trimby, Patrick; Yang, Limei
      Published 2017
      Direct contact [email protected] Source of data (who collected it, at what organisation, etc.) The University of Sydney - Julie Cairney, Alex La Fontaine, Sandra Piazolo, Patrick Trimby, Limei Yang Significance ...
      Open Access
      Dataset
    • Human tooth enamel dataset for Atomic-scale compositional mapping reveals Mg-rich amorphous calcium phosphate in human dental enamel 

      La Fontaine, Alex; Cairney, Julie
      Published 2017
      Direct contact [email protected] Source of data (who collected it, at what organisation, etc.) The University of Sydney - Julie Cairney - Alex La Fontaine Significance (Why is this data significant?) First ...
      Open Access
      Dataset
    • Pure aluminium datasets 

      Ceguerra, Anna
      Published 2017
      R4_02574 ("Roger"), 05601 ("Geoff"), and other pure Al datasets Used for testing reconstruction calibration and reconstruction protocols
      Open Access
      Dataset
    • IFI27 transcription is an early predictor for COVID-19 outcomes; a multi-cohort observational study 

      Shojaei, Maryam; Shamshirian, Amir; Monkman, James; Grice, Laura; Tran, Minh; Tan, Chin Wee; Rossi, Gustavo Rodrigues; McCulloch, Timothy R.; Nalos, Marek; Chew, Keng Yih; Zhu, Yanshan; Xia, Yao; Wells, Timothy J.; Senegaglia, Alexandra Cristina; Rebelatto, Carmen Lúcia Kuniyoshi; Franck, Claudio Luciano; dos Santos, Anna Flavia Ribeiro; de Noronha, Lucia; Motamen, Sepideh; Valadan, Reza; Amjadi, Omolbanin; Gogna, Rajan; Madan, Esha; Alizadeh-Navaei, Reza; Lamperti, Liliana; Zuñiga, Felipe; Nova-Lamperti, Estefania; Labarca, Gonzalo; Knippenberg, Ben; Herwanto, Velma; Wang, Ya; Phu, Amy; Chew, Tracy; Kwan, Timothy; Kim, Karan; Teoh, Sally; Pelaia, Tiana M; Kuan, Win Sen; Jee, Yvette; Iredell, Jon; O’Byrne, Ken; Fraser, John F.; Davis, Melissa J.; Belz, Gabrielle; Warkiani, Majid; Gallo, Carlos Salomon; Souza-Fonseca-Guimaraes, Fernando; Nguyen, Quan; Mclean, Anthony; Kulasinghe, Arutha; Short, Kirsty R.; Tang, Benjamin
      Published 2021
      Robust biomarkers that predict disease outcomes amongst COVID-19 patients are necessary for both patient triage and resource prioritisation. Numerous candidate biomarkers have been proposed for COVID-19. However, at present, ...
      Preprint
    • Binding of a pyrimidine RNA base-mimic to SARS-CoV-2 nonstructural protein 9. 

      Littler, Dene R; Mohanty, Biswaranjan; Lowery, Shea A; Colson, Rhys N; Gully, Benjamin S; Perlman, Stanley; Scanlon, Martin J; Rossjohn, Jamie
      Published 2021
      The coronaviral nonstructural protein 9 (Nsp9) is essential for viral replication; it is the primary substrate of Nsp12's pseudokinase domain within the viral replication transcription complex, an association that also ...
      Article
    • Immune responses in COVID-19 respiratory tract and blood reveal mechanisms of disease severity 

      Zhang, Wuji; Chua, Brendon Y.; Selva, Kevin J.; Kedzierski, Lukasz; Ashhurst, Thomas M.; Haycroft, Ebene R.; Shoffner, Suzanne K.; Hensen, Luca; Boyd, David F.; James, Fiona; Mouhtouris, Effie; Kwong, Jason C.; Chua, Kyra Y. L.; Drewett, George; Copaescu, Ana; Dobson, Julie E.; Rowntree, Louise C.; Habel, Jennifer R.; Allen, Lilith F.; Koay, Hui-Fern; Neil, Jessica A.; Gartner, Matthew; Lee, Christina Y.; Andersson, Patiyan; Seemann, Torsten; Sherry, Norelle L.; Amanat, Fatima; Krammer, Florian; Londrigan, Sarah L.; Wakim, Linda M.; King, Nicholas J.C.; Godfrey, Dale I.; Mackay, Laura K.; Thomas, Paul G.; Nicholson, Suellen; Arnold, Kelly B.; Chung, Amy W.; Holmes, Natasha E.; Smibert, Olivia C.; Trubiano, Jason A.; Gordon, Claire L.; Nguyen, Thi H.O.; Kedzierska, Katherine
      Published 2021
      ABSTRACT Although the respiratory tract is the primary site of SARS-CoV-2 infection and the ensuing immunopathology, respiratory immune responses are understudied and urgently needed to understand mechanisms underlying ...
      Preprint
    • Assessment of COVID-19 intervention strategies in the Nordic countries using genomic epidemiology 

      Duchene, Sebastian; Featherstone, Leo; de Blasio, Birgitte Freiesleben; Holmes, Edward C.; Bohlin, Jon; Pettersson, John H.-O.
      Published 2021
      Abstract The Nordic countries, defined here as Norway, Sweden, Denmark, Finland and Iceland, are known for their comparable demographics and political systems. Since these countries implemented different COVID-19 intervention ...
      Preprint
    • Tuning Ta coating properties through chemical and plasma etching pre-treatment of NiTi wire substrates 

      Pace, Ben; Bendavid, Avi; Ahsan, Mohammed; Dargusch, Matthew; Bhatia, Vijay; Byrnes, Jacob; Cairney, Julie
      Published 2021
      Tantalum coatings have wide applications including as corrosion resistant coatings and radiopaque films for biomedical implants. However, producing coatings of sufficient thickness with the desired mechanical properties ...
      Article
    • Intracardiac Echocardiography for Point-of-Care Guided Left Ventricular Assist Device Implantation: Surgical Implications for COVID-19. 

      Yastrebov, Konstantin; Brunel, Laurencie; Paterson, Hugh S; Williams, Zoe A; Wise, Innes K; Burrows, Christopher S; Bannon, Paul G
      Published 2021
      Data from animal models is now available to initiate assessment of human safety and feasibility of wide-angle three-dimensional intracardiac echocardiography (3D ICE) to guide point-of-care implantation of percutaneous ...
      Article
    • Sars-CoV-2 Genome Sequencing Methods Differ In Their Ability To Detect Variants From Low Viral Load Samples. 

      Lam, C.; Gray, K.; Gall, M.; Sadsad, R.; Arnott, A.; Johnson-Mackinnon, J.; Fong, W.; Basile, K.; Kok, J.; Dwyer, D. E.; Sintchenko, V.; Rockett, R.J.
      Published 2021
      SARS-CoV-2 genomic surveillance has been vital in understanding the spread of COVID-19, the emergence of viral escape mutants and variants of concern. However, low viral loads in clinical specimens affect variant calling ...
      Article
    • Risk awareness during operation of analytical flow cytometers and implications throughout the COVID-19 pandemic 

      Aspland, A.; Chew, C.; Douagi, I.; Galland, T.; Marvin, J.; Monts, J.; Nance, D.; Smith, A.L.; Solga, M.
      Published 2021
      The COVID-19 pandemic has brought biosafety to the forefront of many life sciences. The outbreak has compelled research institutions to re-evaluate biosafety practices and potential at-risk areas within research laboratories ...
      Article
    • An interlaboratory collection of datasets and test cases 

      Ceguerra, Anna
      Published 2021
      Gives the ability for new atom probe users to get training on specific computational programs using the test case document and the sample datasets. The test cases also give sample outputs for the researcher to verify their ...
      Open Access
      Dataset
    • Integrated immune dynamics define correlates of COVID-19 severity and antibody responses 

      Koutsakos, Marios; Rowntree, Louise C; Hensen, Luca; Chua, Brendon Y; van de Sandt, Carolien E; Habel, Jennifer R; Zhang, Wuji; Jia, Xiaoxiao; Kedzierski, Lukasz; Ashhurst, Thomas M; Putri, Givanna H; Marsh-Wakefield, Felix; Read, Mark N; Edwards, Davis N; Clemens, E Bridie; Wong, Chinn Yi; Mordant, Francesca L; Juno, Jennifer A; Amanat, Fatima; Audsley, Jennifer; Holmes, Natasha E; Gordon, Claire L; Smibert, Olivia C; Trubiano, Jason A; Hughes, Carly M; Catton, Mike; Denholm, Justin T; Tong, Steven Y C; Doolan, Denise L; Kotsimbos, Tom C; Jackson, David C; Krammer, Florian; Godfrey, Dale I; Chung, Amy W; King, Nicholas J C; Lewin, Sharon R; Wheatley, Adam K; Kent, Stephen J; Subbarao, Kanta; McMahon, James; Thevarajan, Irani; Nguyen, Thi H O; Cheng, Allen C; Kedzierska, Katherine
      Published 2021
      SARS-CoV-2 causes a spectrum of COVID-19 disease, the immunological basis of which remains ill defined. We analyzed 85 SARS-CoV-2-infected individuals at acute and/or convalescent time points, up to 102 days after symptom ...
      Article
    • Design Optimization of Perfluorinated Liquid-Infused Surfaces for Blood-Contacting Applications 

      Hong, Jun Ki; Mathur, Kavya; Ruhoff, Alexander; Akhavan, B.; Waterhouse, Anna; Neto, Chiara
      Published 2022
      Tethered-liquid perfluorocarbon (TLP) coatings show promise for bloodcontacting medical device applications to reduce blood adhesion and delay thrombosis. However, their fabrication and longevity under external fluid ...
      Open Access
      Article
    • Plasma Activation of Microplates Optimized for One-Step Reagent-Free Immobilization of DNA and Protein 

      Coffi Dit Gleize, Kanako; Tran, Clara T. H.; Waterhouse, Anna; Bilek, Marcela M. M.; Wickham, Shelley F. J.
      Published 2022
      Activated microplates are widely used in biological assays and cell culture to immobilize biomolecules, either through passive physical adsorption or covalent cross-linking. Covalent attachment gives greater stability in ...
      Open Access
      Article
    • Reference Zircon Round Robin 

      La Fontaine, Alex
      Published 2022-03-31
      Direct contact: [email protected]. Source of data: Australian Centre for Microscopy & Microanalysis (ACMM), University of Sydney lead the round robin experiment with 9 international institutes. Significance: ...
      Dataset