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    • Single Nucleotide Differences (SNDs) in the dbSNP database may lead to errors in genotyping and haplotyping studies 

      Musumeci, Lucia; Arthur, Jonathan W; Cheung, Florence SG; Hoque, Ashraful; Lippman, Scott; Reichardt, Juergen KV
      Published 2009-01-01
      The creation of single-nucleotide polymorphism (SNP) databases (such as NCBI dbSNP) has facilitated scientific research in many fields. SNP discovery and detection has improved to the extent that there are over 17 million ...
      Open Access
      Dataset
      View
    • Harvest: an open-source tool for the validation and improvement of peptide identification metrics and fragmentation exploration 

      McHugh, Leo C; Arthur, Jonathan W
      Published 2010-01-01
      Background// Protein identification using mass spectrometry is an important tool in many areas of the life sciences, and in proteomics research in particular. Increasing the number of proteins correctly identified is ...
      Open Access
      Software
      View
    • Asking young Aboriginal people who use illicit drugs about their healthcare preferences using audio-computer-assisted self-interviewing 

      Dowsett, Marianne; Ganora, Christopher; Day, Carolyn; Lee, Kylie; Dawson, Angela; Joseph, Telphia; White, Ann; Freeburn, Bradley; Conigrave, Katherine
      Published 2019
      Introduction and Aims Substance use significantly contributes to increasing the disease burden experienced by young Aboriginal and Torres Strait Islander (Aboriginal) Australians. Little is known about the primary ...
      Open Access
      Article
      View
    • Real-time direct diaphragm tracking using kV imaging on a standard linear accelerator. 

      Hindley, N; Keall, P; Booth, J; Shieh, C-C
      Published 2019-01-01
      Purpose: As the predominant driver of respiratory motion, the diaphragm represents a key surrogate for motion management during the irradiation of thoracic cancers. Existing approaches to diaphragm tracking often produce ...
      Open Access
      Article
      View
    • Technical Note: The first live treatment on a 1.0 Tesla inline MRI-linac. 

      Liney, G; Jelen, U; Byrne, H; Dong, B; Roberts, TL; Kuncic, Z; Keall, P
      Published 2019-01-01
      Purpose: This work describes the first live imaging and radiation delivery performed on a prototype 1.0 T inline MRI-Linac system in a rat brain tumor model, which was conducted on 29 January 2019. Methods: A human scale ...
      Open Access
      Article
      View
    • Dual cardiac and respiratory gated thoracic imaging via adaptive gantry velocity and projection rate modulation on a linear accelerator: A Proof-of-Concept Simulation Study. 

      Reynolds, T; Shieh, C-C; Keall, P; O'Brien, R
      Published 2019-01-01
      Purpose: Cardiac motion is typically not accounted for during pretreatment imaging for central lung and mediastinal tumors. However, cardiac induced tumor motion averages 5.8 mm for esophageal tumors and 3-5 mm for some ...
      Open Access
      Article
      View
    • See, Think, and Act: Real-Time Adaptive Radiotherapy. 

      Keall, P; Poulsen, P; Booth, J
      Published 2019-01-01
      The world is embracing the information age, with real-time data at hand to assist with many decisions. Similarly, in cancer radiotherapy we are inexorably moving toward using information in a smarter and faster fashion, ...
      Open Access
      Article
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    • Dosimetric impact of intrafraction rotations in stereotactic prostate radiotherapy: A subset analysis of the TROG 15.01 SPARK trial. 

      Wolf, J; Nicholls, J; Hunter, P; Nguyen, DT; Keall, P; Martin, J
      Published 2019-01-01
      Background and purpose: Accurate delivery of radiotherapy is critical to achieve optimal treatment outcomes. Interfraction translational IGRT is now standard, and intrafraction motion management is becoming accessible. ...
      Open Access
      Article
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    • Time-resolved Volumetric MRI in MRI-guided Radiotherapy: An in Silico Comparative Analysis 

      Paganelli, C; Portoso, S; Garau, N; Meschini, G; Via, R; Buizza, G; Keall, P; Riboldi, M; Baroni, G
      Published 2019-01-01
      MRI-treatment units enable 2D cine-MRI centred in the tumour for motion detection in radiotherapy, but they lack 3D information due to spatio-temporal limits. To derive time-resolved 3D information, different approaches ...
      Open Access
      Article
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    • The Accuracy and Precision of the KIM Motion Monitoring System Used in the Multi-Institutional TROG 15.01 Stereotactic Prostate Ablative Radiotherapy With KIM (SPARK) Trial 

      Hewson, E; Nguyen, DT; O'Brien, R; Kim, J-H; Montanaro, T; Moodie, T; Greer, P; Hardcastle, N; Eade, T; Kneebone, A; Hruby, G; Hayden, A; Turner, S; Siva, S; Tai, K-H; Hunter, P; Sams, J; Poulsen, P; Booth, J; Martin, J; Keall, P
      Published 2019-01-01
      Purpose: Kilovoltage intrafraction monitoring (KIM) allows for real-time image guidance for tracking tumor motion in six-degrees-of-freedom (6DoF) on a standard linear accelerator. This study assessed the geometric accuracy ...
      Open Access
      Article
      View
    • Technical Note: Experimental Characterization of the Dose Deposition in Parallel MRI-linacs at Various Magnetic Field Strengths 

      Begg, J; Alnaghy, S; Causer, T; Alharthi, T; George, A; Glaubes, L; Dong, B; Goozee, G; Keall, P; Jelen, U; Liney, G; Holloway, L
      Published 2019-01-01
      Purpose: Dose deposition measurements for parallel MRI-linacs have previously only shown comparisons between 0 T and a single available magnetic field. The Australian MRI-Linac consists of a magnet coupled with a dual ...
      Open Access
      Article
      View
    • Imaging of regional ventilation: Is CT ventilation imaging the answer? A systematic review of the validation data. 

      Hegi-Johnson, F; de Ruysscher, D; Keall, P; Hendriks, L; Vinogradskiy, Y; Yamamoto, T; Tahir, B; Kipritidis, J
      Published 2019-01-01
      Computed Tomography Ventilation Imaging (CTVI) is an experimental imaging modality that derives regional lung function information from non-contrast respiratory-correlated CT datasets. Despite CTVI being extensively studied ...
      Open Access
      Article
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    • Anatomical Deformation Due to Horizontal Rotation: Towards Gantry-Free Radiation Therapy 

      Buckley, J; Rai, R; Liney, G; Dowling, J; Holloway, L; Metcalfe, P; Keall, P
      Published 2019-01-01
      Gantry-free radiation therapy systems may be simpler and more cost effective, particularly for MRI-guided photon or hadron therapy. This study aims to understand and quantify anatomical deformations caused by horizontal ...
      Open Access
      Article
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    • FLASH radiotherapy: Newsflash or flash in the pan? 

      Maxim, P; Keall, P; Cai, J
      Published 2019-01-01
      No abstract. A point / counterpoint article on the merits of ultra-high dose rate radiation therapy.
      Open Access
      Article
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    • SPARE: Sparse-view reconstruction challenge for 4D cone-beam CT from a 1-min scan. 

      Shieh, C-C; Gonzalez, Y; Li, B; Jia, X; Rit, S; Mory, S; Riblett, M; Hugo, G; Zhang, Y; Jiang, Z; Liu, X; Ren, L; Keall, P
      Published 2019-01-01
      Purpose: Currently, four-dimensional (4D) cone-beam computed tomography (CBCT) requires a 3-4 min full-fan scan to ensure usable image quality. Recent advancements in sparse-view 4D-CBCT reconstruction have opened the ...
      Open Access
      Article
      View
    • Simulated multileaf collimator tracking for stereotactic liver radiotherapy guided by kilovoltage intrafraction monitoring: Dosimetric gain and target overdose trends 

      Poulsen, Per; Murtaza, Ghulam; Worm, Esben; Ravkilde, Thomas; O'Brien, Ricky; Grau, Cai; Hoyer, Morten; Keall, Paul
      Published 2020
      Purpose: To investigate the potential benefit of multileaf collimator (MLC) tracking guided by kilovoltage intrafraction monitoring (KIM) during stereotactic body radiotherapy (SBRT) in the liver, and to understand trends ...
      Open Access
      Article
      View
    • Optimising lung imaging for cancer radiation therapy 

      Dunbar, Michelle; O'Brien, Ricky; Froyland, Gary
      Published 2020
      Effective radiotherapy is dependent on being able to (i) visualise the tumour clearly, and (ii) deliver the correct dose to the cancerous tissue, whilst sparing the healthy tissue as much as possible. In the presence of ...
      Open Access
      Article
      View
    • 'That thing in his head': Aboriginal and non-Aboriginal Australian caregiver responses to neurodevelopmental disability diagnoses 

      Hamilton, Sharynne; Maslen, Sarah; Watkins, Rochelle; Conigrave, Katherine; Freeman, Jacinta; O'Donnell, Melissa; Mutch, Raewyn; Bower, Carol
      Published 2020
      Little is known about the significance of cultural differences to how caregivers receive a diagnosis of neurodevelopmental disability. As part of a Fetal Alcohol Spectrum Disorder prevalence study among sentenced, detained ...
      Open Access
      Article
      View
    • Real-Time Image Guided Ablative Prostate Cancer Radiation Therapy: Results From the TROG 15.01 SPARK Trial 

      Keall, Paul; Nguyen, Doan Trang; O'Brien, Ricky; Hewson, Emily; Ball, Helen; Poulsen, Per; Booth, Jeremy; Greer, Peter; Hunter, Perry; Wilton, Lee; Bromley, Regina; Kipritidis, John; Eade, Thomas; Kneebone, Andrew; Hruby, George; Moodie, Trevor; Hayden, Amy; Turner, Sandra; Arumugam, Sankar; Sidhom, Mark; Harcastle, Nick; Siva, Shankar; Tai, Keen-Hun; Gebski, Val; Martin, Jarad
      Published 2020
      Purpose: Kilovoltage intrafraction monitoring (KIM) is a novel software platform implemented on standard radiation therapy systems and enabling real-time image guided radiation therapy (IGRT). In a multi-institutional ...
      Open Access
      Article
      View
    • Reducing 4D CT imaging artifacts at the source: first experimental results from the respiratory adaptive computed tomography (REACT) system 

      Morton, Natasha; Sykes, Jonathan; Barber, Jeffrey; Hofmann, Christian; Keall, Paul; O'Brien, Ricky
      Published 2020
      Breathing variations during 4D CT imaging often manifest as geometric irregularities known as respiratory-induced image artifacts and ultimately effect radiotherapy treatment efficacy. To reduce such image artifacts we ...
      Open Access
      Article
      View
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