• Genomic epidemiology reveals how restriction measures shaped the SARS-CoV-2 epidemic in Brazil 

      Giovanetti, Marta; Slavov, Svetoslav Nanev; Fonseca, Vagner; Wilkinson, Eduan; Tegally, Houriiyah; Patané, José Salvatore Leister; Viala, Vincent Louis; San, Emmanuel James; Rodrigues, Evandra Strazza; Santos, Elaine Vieira; Aburjaile, Flavia; Xavier, Joilson; Fritsch, Hegger; Adelino, Talita Emile Ribeiro; Pereira, Felicidade; Leal, Arabela; de Melo Iani, Felipe Campos; de Carvalho Pereira, Glauco; Vazquez, Cynthia; Sanabria, Gladys Mercedes Estigarribia; de Oliveira, Elaine Cristina; Demarchi, Luiz; Croda, Julio; dos Santos Bezerra, Rafael; de Lima, Loyze Paola Oliveira; Martins, Antonio Jorge; dos Santos Barros, Claudia Renata; Marqueze, Elaine Cristina; de Souza Todao Bernardino, Jardelina; Moretti, Debora Botequio; Brassaloti, Ricardo Augusto; de Lello Rocha Campos Cassano, Raquel; Mariani, Pilar Drummond Sampaio Corrêa; Kitajima, João Paulo; Santos, Bibiana; Proto-Siqueira, Rodrigo; Cantarelli, Vlademir Vicente; Tosta, Stephane; Nardy, Vanessa Brandão; da Silva, Luciana Reboredo de Oliveira; Gómez, Marcela Kelly Astete; Lima, Jaqueline Gomes; Ribeiro, Adriana Aparecida; Guimarães, Natália Rocha; Watanabe, Luiz Takao; Da Silva, Luana Barbosa; da Silva Ferreira, Raquel; da Penha, Mara Patricia F.; Ortega, María José; de la Fuente, Andrea Gómez; Villalba, Shirley; Torales, Juan; Gamarra, María Liz; Aquino, Carolina; Figueredo, Gloria Patricia Martínez; Fava, Wellington Santos; Motta-Castro, Ana Rita C.; Venturini, James; de Oliveira, Sandra Maria do Vale Leone; Gonçalves, Crhistinne Cavalheiro Maymone; do Carmo Debur Rossa, Maria; Becker, Guilherme Nardi; Presibella, Mayra Marinho; Marques, Nelson Quallio; Riediger, Irina Nastassja; Raboni, Sonia; Coelho, Gabriela Mattoso; Cataneo, Allan Henrique Depieri; Zanluca, Camila; dos Santos, Claudia N Duarte; Assato, Patricia Akemi; Allan Costa, Felipe da Silva da; Poleti, Mirele Daiana; Lesbon, Jessika Cristina Chagas; Mattos, Elisangela Chicaroni; Banho, Cecilia Artico; Sacchetto, Lívia; Moraes, Marília Mazzi; Grotto, Rejane Maria Tommasini; Souza-Neto, Jayme A.; Nogueira, Maurício Lacerda; Fukumasu, Heidge; Coutinho, Luiz Lehmann; Calado, Rodrigo Tocantins; Neto, Raul Machado; de Filippis, Ana Maria Bispo; da Cunha, Rivaldo Venancio; Freitas, Carla; Peterka, Cassio Roberto Leonel; de Fátima Rangel Fernandes, Cássia; de Araújo, Wildo Navegantes; do Carmo Said, Rodrigo Fabiano; Almiron, Maria; de Albuquerque e Melo, Carlos Frederico Campelo; Lourenço, José; de Oliveira, Tulio; Holmes, Edward C.; Haddad, Ricardo; Sampaio, Sandra Coccuzzo; Elias, Maria Carolina; Kashima, Simone; de Alcantara, Luiz Carlos Junior; Covas, Dimas Tadeu
      Published 2021
      Abstract Brazil has experienced some of the highest numbers of COVID-19 infections and deaths globally and made Latin America a pandemic epicenter from May 2021. Although SARS-CoV-2 established sustained transmission in ...
      Preprint
    • Replacement of the Gamma by the Delta variant in Brazil: Impact of lineage displacement on the ongoing pandemic 

      Giovanetti, Marta; Fonseca, Vagner; Wilkinson, Eduan; Tegally, Houriiyah; San, Emmanuel James; Althaus, Christian L; Xavier, Joilson; Nanev Slavov, Svetoslav; Viala, Vincent Louis; Ranieri Jerônimo Lima, Alex; Ribeiro, Gabriela; Souza-Neto, Jayme A; Fukumasu, Heidge; Lehmann Coutinho, Luiz; Venancio da Cunha, Rivaldo; Freitas, Carla; Campelo de A E Melo, Carlos F; Navegantes de Araújo, Wildo; Do Carmo Said, Rodrigo Fabiano; Almiron, Maria; de Oliveira, Tulio; Coccuzzo Sampaio, Sandra; Elias, Maria Carolina; Covas, Dimas Tadeu; Holmes, Edward C; Lourenço, José; Kashima, Simone; de Alcantara, Luiz Carlos Junior
      Published 2022
      The coronavirus disease 2019 (COVID-19) epidemic in Brazil was driven mainly by the spread of Gamma (P.1), a locally emerged variant of concern (VOC) that was first detected in early January 2021. This variant was estimated ...
      Article
    • Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2 with grinch 

      O'Toole, Áine; Hill, Verity; Pybus, Oliver G.; Watts, Alexander; Bogoch, Issac I.; Khan, Kamran; Messina, Jane P.; Tegally, Houriiyah; Lessells, Richard R.; Giandhari, Jennifer; Pillay, Sureshnee; Tumedi, Kefentse Arnold; Nyepetsi, Gape; Kebabonye, Malebogo; Matsheka, Maitshwarelo; Mine, Madisa; Tokajian, Sima; Hassan, Hamad; Salloum, Tamara; Merhi, Georgi; Koweyes, Jad; Geoghegan, Jemma L.; de Ligt, Joep; Ren, Xiaoyun; Storey, Matthew; Freed, Nikki E.; Pattabiraman, Chitra; Prasad, Pramada; Desai, Anita S.; Vasanthapuram, Ravi; Schulz, Thomas F.; Steinbrück, Lars; Stadler, Tanja; Parisi, Antonio; Bianco, Angelica; de Viedma, Darío García; Buenestado-Serrano, Sergio; Borges, Vítor; Isidro, Joana; Duarte, Sílvia; Gomes, João Paulo; Zuckerman, Neta S.; Mandelboim, Michal; Mor, Orna; Seemann, Torsten; Arnott, Alicia; Draper, Jenny; Gall, Mailie; Rawlinson, William; Deveson, Ira; Schlebusch, Sanmarié; McMahon, Jamie; Leong, Lex; Lim, Chuan Kok; Chironna, Maria; Loconsole, Daniela; Bal, Antonin; Josset, Laurence; Holmes, Edward C.; St. George, Kirsten; Lasek-Nesselquist, Erica; Sikkema, Reina S.; Munnink, Bas Oude; Koopmans, Marion; Brytting, Mia; Rani, V. Sudha; Pavani, S.; Smura, Teemu; Heim, Albert; Kurkela, Satu; Umair, Massab; Salman, Muhammad; Bartolini, Barbara; Rueca, Martina; Drosten, Christian; Wolff, Thorsten; Silander, Olin; Eggink, Dirk; Reusken, Chantal; Vennema, Harry; Park, Aekyung; Carrington, Christine; Sahadeo, Nikita; Carr, Michael; Gonzalez, Gabo; de Oliveira, Tulio; Faria, Nuno; Rambaut, Andrew; Kraemer, Moritz U. G.
      Published 2021
      Late in 2020, two genetically-distinct clusters of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) with mutations of biological concern were reported, one in the United Kingdom and one in South Africa. Using ...
      Article