Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2 with grinch
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O'Toole, ÁineHill, Verity
Pybus, Oliver G.
Watts, Alexander
Bogoch, Issac I.
Khan, Kamran
Messina, Jane P.
Tegally, Houriiyah
Lessells, Richard R.
Giandhari, Jennifer
Pillay, Sureshnee
Tumedi, Kefentse Arnold
Nyepetsi, Gape
Kebabonye, Malebogo
Matsheka, Maitshwarelo
Mine, Madisa
Tokajian, Sima
Hassan, Hamad
Salloum, Tamara
Merhi, Georgi
Koweyes, Jad
Geoghegan, Jemma L.
de Ligt, Joep
Ren, Xiaoyun
Storey, Matthew
Freed, Nikki E.
Pattabiraman, Chitra
Prasad, Pramada
Desai, Anita S.
Vasanthapuram, Ravi
Schulz, Thomas F.
Steinbrück, Lars
Stadler, Tanja
Parisi, Antonio
Bianco, Angelica
de Viedma, Darío García
Buenestado-Serrano, Sergio
Borges, Vítor
Isidro, Joana
Duarte, Sílvia
Gomes, João Paulo
Zuckerman, Neta S.
Mandelboim, Michal
Mor, Orna
Seemann, Torsten
Arnott, Alicia
Draper, Jenny
Gall, Mailie
Rawlinson, William
Deveson, Ira
Schlebusch, Sanmarié
McMahon, Jamie
Leong, Lex
Lim, Chuan Kok
Chironna, Maria
Loconsole, Daniela
Bal, Antonin
Josset, Laurence
Holmes, Edward C.
St. George, Kirsten
Lasek-Nesselquist, Erica
Sikkema, Reina S.
Munnink, Bas Oude
Koopmans, Marion
Brytting, Mia
Rani, V. Sudha
Pavani, S.
Smura, Teemu
Heim, Albert
Kurkela, Satu
Umair, Massab
Salman, Muhammad
Bartolini, Barbara
Rueca, Martina
Drosten, Christian
Wolff, Thorsten
Silander, Olin
Eggink, Dirk
Reusken, Chantal
Vennema, Harry
Park, Aekyung
Carrington, Christine
Sahadeo, Nikita
Carr, Michael
Gonzalez, Gabo
de Oliveira, Tulio
Faria, Nuno
Rambaut, Andrew
Kraemer, Moritz U. G.
Abstract
Late in 2020, two genetically-distinct clusters of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) with mutations of biological concern were reported, one in the United Kingdom and one in South Africa. Using a combination of data from routine surveillance, genomic ...
See moreLate in 2020, two genetically-distinct clusters of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) with mutations of biological concern were reported, one in the United Kingdom and one in South Africa. Using a combination of data from routine surveillance, genomic sequencing and international travel we track the international dispersal of lineages B.1.1.7 and B.1.351 (variant 501Y-V2). We account for potential biases in genomic surveillance efforts by including passenger volumes from location of where the lineage was first reported, London and South Africa respectively. Using the software tool grinch (global report investigating novel coronavirus haplotypes), we track the international spread of lineages of concern with automated daily reports, Further, we have built a custom tracking website (cov-lineages.org/global_report.html) which hosts this daily report and will continue to include novel SARS-CoV-2 lineages of concern as they are detected.
See less
See moreLate in 2020, two genetically-distinct clusters of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) with mutations of biological concern were reported, one in the United Kingdom and one in South Africa. Using a combination of data from routine surveillance, genomic sequencing and international travel we track the international dispersal of lineages B.1.1.7 and B.1.351 (variant 501Y-V2). We account for potential biases in genomic surveillance efforts by including passenger volumes from location of where the lineage was first reported, London and South Africa respectively. Using the software tool grinch (global report investigating novel coronavirus haplotypes), we track the international spread of lineages of concern with automated daily reports, Further, we have built a custom tracking website (cov-lineages.org/global_report.html) which hosts this daily report and will continue to include novel SARS-CoV-2 lineages of concern as they are detected.
See less
Date
2021Share