Enhancing Medical Vision-Language Foundation Models in Tumour Malignancy Recognition via Pre-trained Language Models
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Open Access
Type
ThesisThesis type
Masters by ResearchAuthor/s
Wang, XiaoAbstract
Vision-Language Foundation Models (VLFMs) offer strong potential for zero-shot learning in histopathology, where models must recognise rare or unseen disease subtypes with limited annotation. However, pathology VLFMs often rely on coarse textual descriptions that miss fine-grained ...
See moreVision-Language Foundation Models (VLFMs) offer strong potential for zero-shot learning in histopathology, where models must recognise rare or unseen disease subtypes with limited annotation. However, pathology VLFMs often rely on coarse textual descriptions that miss fine-grained visual cues, causing weak image-text alignment, noisy retrieval, and reduced classification accuracy. This thesis proposes Retrieval-based De-noising Causal Language Modelling (RDCLM), a framework for improving zero-shot tumour malignancy recognition by refining noisy retrieval outputs from pathology VLFMs. RDCLM builds a pathology-specific knowledge base of discriminative benign and malignant tumour descriptions using a large language model. For each query histopathology image, a pathology VLFM retrieves candidate descriptions from this knowledge base, and a frozen pre-trained language model integrates the retrieved text with projected visual features to suppress irrelevant content and retain malignancy-relevant evidence. To improve robustness, two retrieval augmentation strategies are introduced: Retrieval Negatives Replacement (RNR) and Description-wise Shuffling (DS). A Multi-Branch Diverse-Dimension Projection architecture with an auxiliary Inter- and Intra-Branch Min-Max Mutual Information Optimisation objective is also proposed to encourage diverse and informative cross-modal feature learning. Precision Reward Loss is further evaluated as an auxiliary refinement for cleaner de-noised descriptions. Experiments on five histopathology cancer datasets show that RDCLM improves both zero-shot image-text retrieval and image classification compared with state-of-the-art CLIP-based, retrieval-based, and unimodal baselines. The results demonstrate that retrieval de-noising with pre-trained language models can strengthen semantic alignment and improve VLFM-based malignancy recognition in histopathology.
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See moreVision-Language Foundation Models (VLFMs) offer strong potential for zero-shot learning in histopathology, where models must recognise rare or unseen disease subtypes with limited annotation. However, pathology VLFMs often rely on coarse textual descriptions that miss fine-grained visual cues, causing weak image-text alignment, noisy retrieval, and reduced classification accuracy. This thesis proposes Retrieval-based De-noising Causal Language Modelling (RDCLM), a framework for improving zero-shot tumour malignancy recognition by refining noisy retrieval outputs from pathology VLFMs. RDCLM builds a pathology-specific knowledge base of discriminative benign and malignant tumour descriptions using a large language model. For each query histopathology image, a pathology VLFM retrieves candidate descriptions from this knowledge base, and a frozen pre-trained language model integrates the retrieved text with projected visual features to suppress irrelevant content and retain malignancy-relevant evidence. To improve robustness, two retrieval augmentation strategies are introduced: Retrieval Negatives Replacement (RNR) and Description-wise Shuffling (DS). A Multi-Branch Diverse-Dimension Projection architecture with an auxiliary Inter- and Intra-Branch Min-Max Mutual Information Optimisation objective is also proposed to encourage diverse and informative cross-modal feature learning. Precision Reward Loss is further evaluated as an auxiliary refinement for cleaner de-noised descriptions. Experiments on five histopathology cancer datasets show that RDCLM improves both zero-shot image-text retrieval and image classification compared with state-of-the-art CLIP-based, retrieval-based, and unimodal baselines. The results demonstrate that retrieval de-noising with pre-trained language models can strengthen semantic alignment and improve VLFM-based malignancy recognition in histopathology.
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Date
2026Rights statement
The author retains copyright of this thesis. It may only be used for the purposes of research and study. It must not be used for any other purposes and may not be transmitted or shared with others without prior permission.Faculty/School
Faculty of Engineering, School of Computer ScienceAwarding institution
The University of SydneyShare