• Documenting elimination of co-circulating COVID-19 clusters using genomics in New South Wales, Australia 

      Arnott, Alicia; Draper, Jenny; Rockett, Rebecca J.; Lam, Connie; Sadsad, Rosemarie; Gall, Mailie; Martinez, Elena; Byun, Roy; Musto, Jennie; Marais, Ben; Chen, Sharon C.-A.; Kok, Jen; Dwyer, Dominic E.; Sintchenko, Vitali
      Published 2021
      ObjectiveTo adapt 'fishplots' to describe real-time evolution of SARS-CoV-2 genomic clusters.ResultsThis novel analysis adapted the fishplot to depict the size and duration of circulating genomic clusters over time in New ...
      Article
    • An emergent clade of SARS-CoV-2 linked to returned travellers from Iran 

      Eden, John-Sebastian; Rockett, Rebecca; Carter, Ian; Rahman, Hossinur; de Ligt, Joep; Hadfield, James; Storey, Matthew; Ren, Xiaoyun; Tulloch, Rachel; Basile, Kerri; Wells, Jessica; Byun, Roy; Gilroy, Nicky; O'Sullivan, Matthew V; Sintchenko, Vitali; Chen, Sharon C; Maddocks, Susan; Sorrell, Tania C; Holmes, Edward C.; Dwyer, Dominic E; Kok, Jen
      Published 2020
      The SARS-CoV-2 epidemic has rapidly spread outside China with major outbreaks occurring in Italy, South Korea, and Iran. Phylogenetic analyses of whole-genome sequencing data identified a distinct SARS-CoV-2 clade linked ...
      Article
    • An emergent clade of SARS-CoV-2 linked to returned travellers from Iran 

      Eden, John-Sebastian; Rockett, Rebecca; Carter, Ian; Rahman, Hossinur; de Ligt, Joep; Hadfield, James; Storey, Matthew; Ren, Xiaoyun; Tulloch, Rachel; Basile, Kerri; Wells, Jessica; Byun, Roy; Gilroy, Nicky; O'Sullivan, Matthew V; Sintchenko, Vitali; Chen, Sharon C; Maddocks, Susan; Sorrell, Tania C; Holmes, Edward C.; Dwyer, Dominic E; Kok, Jen
      Published 2020
      The SARS-CoV-2 epidemic has rapidly spread outside China with major outbreaks occurring in Italy, South Korea and Iran. Phylogenetic analyses of whole genome sequencing data identified a distinct SARS-CoV-2 clade linked ...
      Preprint
    • Revealing COVID-19 Transmission by SARS-CoV-2 Genome Sequencing and Agent Based Modelling 

      Rockett, Rebecca J; Arnott, Alicia; Lam, Connie; Sadsad, Rosemarie; Timms, Verlaine; Gray, Karen-Ann; Eden, John-Sebastian; Chang, Sheryl; Gall, Mailie; Draper, Jenny; Sim, Eby; Bachmann, Nathan L; Carter, Ian; Basile, Kerri; Byun, Roy; O'Sullivan, Matthew V; Chen, Sharon C-A; Maddocks, Susan; Sorrell, Tania C; Dwyer, Dominic E; Holmes, Edward C.; Kok, Jen; Prokopenko, Mikhail; Sintchenko, Vitali
      Published 2020
      Community transmission of the new coronavirus SARS-CoV-2 is a major public health concern that remains difficult to assess. We present a genomic survey of SARS-CoV-2 from a during the first 10 weeks of COVID-19 activity ...
      Preprint
    • Revealing COVID-19 transmission in Australia by SARS-CoV-2 genome sequencing and agent-based modeling 

      Rockett, Rebecca J.; Arnott, Alicia; Lam, Connie; Sadsad, Rosemarie; Timms, Verlaine; Gray, Karen-Ann; Eden, John-Sebastian; Chang, Sheryl; Gall, Mailie; Draper, Jenny; Sim, Eby M.; Bachmann, Nathan L.; Carter, Ian; Basile, Kerri; Byun, Roy; O'Sullivan, Matthew V.; Chen, Sharon C-A; Maddocks, Susan; Sorrell, Tania C.; Dwyer, Dominic E.; Holmes, Edward C.; Kok, Jen; Prokopenko, Mikhail; Sintchenko, Vitali
      Published 2020
      In January 2020, a novel betacoronavirus (family Coronaviridae), named severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), was identified as the etiological agent of a cluster of pneumonia cases occurring in Wuhan ...
      Article